PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02286.1_g00008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 357aa    MW: 40152.5 Da    PI: 4.9792
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02286.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.45.7e-21142192155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s+y+G+r+++ +g+W+AeIrdp+e     r++lg+f taeeAa+a++aa+++++g
  Rsa1.0_02286.1_g00008.1 142 SQYRGIRQRP-WGKWAAEIRDPRE---GSRVWLGTFKTAEEAARAYDAAARRIRG 192
                              78********.**********965...3*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.63E-22142201IPR016177DNA-binding domain
CDDcd000182.01E-17142201No hitNo description
PfamPF008471.7E-13142192IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-33143202IPR001471AP2/ERF domain
SMARTSM003803.9E-38143206IPR001471AP2/ERF domain
PROSITE profilePS5103224.408143200IPR001471AP2/ERF domain
PRINTSPR003679.0E-12144155IPR001471AP2/ERF domain
PRINTSPR003679.0E-12166182IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MCGGAIISDF IPPPRSRRVT SEFLWPDLKK KKSSRKRSSS FFDLDDEFEA DFQGFNDDSF  60
IDCDDAKPFV FAGARKPPAA TAAGKSDSSF SDVWVRLKYL RFGYILNQPY RIYLDIVIAD  120
SAFGKKVADG EGERSAKRKR KSQYRGIRQR PWGKWAAEIR DPREGSRVWL GTFKTAEEAA  180
RAYDAAARRI RGSKAKVNFP EENPLAKKVA KPNPNPTLVQ NVDNSFDNIC FMEEKQEVNS  240
SNNNNNQFGN GYHQLFSSDQ GSNSFGCSEF GWNDQAPITP EISSAFINNN NSALFAEEAD  300
PAKKLKSMDF ETPYNNTEWD SSLDFFNEDA VATQDNGANP MELWSIDEID SMIGGVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-21143200563ATERF1
3gcc_A1e-21143200563ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532111e-102AK353211.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-22-M23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009106954.11e-174PREDICTED: ethylene-responsive transcription factor RAP2-12
RefseqXP_013655444.11e-174PREDICTED: ethylene-responsive transcription factor RAP2-12-like
SwissprotQ9SSA81e-151RA212_ARATH; Ethylene-responsive transcription factor RAP2-12
TrEMBLA0A0D3BMZ61e-171A0A0D3BMZ6_BRAOL; Uncharacterized protein
STRINGBra030919.1-P1e-160(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.21e-117related to AP2 12